| Microbotryum adenopetalae | species |
| Microbotryum afromontanum | species |
| Microbotryum ahmadianum | species |
| Microbotryum alpinum | species |
| Microbotryum alsines | species |
| Microbotryum anomalum | species |
| Microbotryum antherarum | species |
| Microbotryum arcticum | species |
| Microbotryum arenariae-bryophyllae | species |
| Microbotryum aviculare | species |
| Microbotryum bardanense | species |
| Microbotryum betonicae | species |
| Microbotryum bistortarum | species |
| Microbotryum bosniacum | species |
| Microbotryum calandriniae | species |
| Microbotryum calandriniicola | species |
| Microbotryum calyptratae | species |
| Microbotryum cardui | species |
| Microbotryum carthusianorum | species |
| Microbotryum cephalariae | species |
| Microbotryum chloranthae-verrucosum | species |
| Microbotryum cichorii | species |
| Microbotryum cilinode | species |
| Microbotryum claytoniae | species |
| Microbotryum cordae | species |
| Microbotryum coronariae | species |
| Microbotryum coronatum | species |
| Microbotryum dehiscens | species |
| Microbotryum dianthorum | species |
| Microbotryum ducellieri | species |
| Microbotryum dumosum | species |
| Microbotryum duriaeanum | species |
| Microbotryum emodense | species |
| Microbotryum emodensis | species |
| Microbotryum filamenticola | species |
| Microbotryum flosculorum | species |
| Microbotryum gaussenii | species |
| Microbotryum gayophyti | species |
| Microbotryum goeppertianum | species |
| Microbotryum heliospermae | species |
| Microbotryum heliospermatis | species |
| Microbotryum himalense | species |
| Microbotryum holostei | species |
| Microbotryum intermedium | species |
| Microbotryum jehudanum | species |
| Microbotryum koenigiae | species |
| Microbotryum kuehneanum | species |
| Microbotryum lagerheimii | species |
| Microbotryum lewisiae | species |
| Microbotryum liroi | species |
| Microbotryum longisetum | species |
| Microbotryum lychnidis-dioicae | species |
| Microbotryum major | species |
| Microbotryum marginale | species |
| Microbotryum minuartiae | species |
| Microbotryum moehringiae | species |
| Microbotryum moelleri | species |
| Microbotryum moenchiae-manticae | species |
| Microbotryum montagnei | species |
| Microbotryum morinae | species |
| Microbotryum nannfeldtii | species |
| Microbotryum nelsonianum | species |
| Microbotryum nepalense | species |
| Microbotryum nivale | species |
| Microbotryum ocrearum | species |
| Microbotryum onopordi | species |
| Microbotryum parlatorei | species |
| Microbotryum paucireticulatum | species |
| Microbotryum perfoliatae | species |
| Microbotryum picaceum | species |
| Microbotryum pinguiculae | species |
| Microbotryum piperi | species |
| Microbotryum piperii | species |
| Microbotryum polygoni-alati | species |
| Microbotryum primulae | species |
| Microbotryum prostratum | species |
| Microbotryum pustulatum | species |
| Microbotryum radians | species |
| Microbotryum receptaculorum | species |
| Microbotryum reticulatum | species |
| Microbotryum rhei | species |
| Microbotryum salviae | species |
| Microbotryum saponariae | species |
| Microbotryum savilei | species |
| Microbotryum scabiosae | species |
| Microbotryum scolymi | species |
| Microbotryum scorzonerae | species |
| Microbotryum shastense | species |
| Microbotryum shykoffianum | species |
| Microbotryum silenes-acaulis | species |
| Microbotryum silenes-dioicae | species |
| Microbotryum silenes-inflatae | species |
| Microbotryum silenes-saxifragae | species |
| Microbotryum silybum | species |
| Microbotryum stellariae | species |
| Microbotryum stewartii | species |
| Microbotryum stygium | species |
| Microbotryum succisae | species |
| Microbotryum superbum | species |
| Microbotryum tenuisporum | species |
| Microbotryum tovarae | species |
| Microbotryum tragopogonis-pratensis | species |
| Microbotryum tuberculiforme | species |
| Microbotryum tumeforme | species |
| Microbotryum vinosum | species |
| Microbotryum violaceoirregulare | species |
| Microbotryum violaceoverrucosum | species |
| Microbotryum violaceum | species |
| Microbotryum vivipari | species |
| Microbotryum warmingii | species |